CIT Research Documentation
CIT Research Documentation
University of Groningen
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    • Table of Contents
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  • Introduction
    • Training
    • What is a cluster
    • Workflow and data storage
    • Accounts, access and Policies
    • Cluster description
    • Support / Status / Walk-in sessions
    • Scientific output
  • Connecting to the system
    • Connecting to the system
    • Windows
    • Linux
    • macOS
    • Web Portal
    • Login nodes
    • Advanced: Remote desktop
    • Advanced: Using SSH keys
    • Advanced: Connecting to Hábrók with Visual Studio Code
  • Command line interface
    • Working on the command line - part 1
    • Working on the command line - part 2
    • Viewing and editing files
  • Software environment
    • Python
    • Software environment
    • Installation of extra applications or libraries
    • Advanced: Toolchains
    • Using EESSI on Hábrók
  • Data management
    • clients
    • Storage areas
    • Transferring data
    • Quota
    • Sharing data
    • Data transfer with Google Drive
  • Job Management
    • Resource allocation: Jobs and jobscripts
    • Running jobs
    • Cancelling jobs
    • Getting information about submitted jobs
    • Checking results
    • Partitions and Limits
  • Advanced Job Management
    • Many File Jobs
    • Checking job performance
    • Controlling the number of threads for OpenBLAS and Intel MKL
    • Getting information about jobs, nodes and partitions
    • Group specific partitions
    • Interactive jobs
    • Job arrays
    • Job dependencies
    • Job prioritization
    • Nvidia RTX Pro 6000 GPU Nodes
    • Passing parameters to a job script
    • Running jobs on GPUs
  • Examples
    • Apptainer Containers
    • AlphaFold
    • DIRAC
    • Gaussian
    • Jupyter notebooks
    • Mamba installation
    • Mathematica
    • MATLAB
    • MPI
    • Ollama on Hábrók
    • ORCA
    • ParaView
    • Perl
    • Python
    • R
    • Running LLMs
    • Spyder
    • Stata
    • Using Python modules in VScode
  • Additional information
    • Course material
    • Frequently Asked Questions
    • Hábrók Changelog
    • Host keys
    • Job hints
    • Known issues
    • Maintenance
    • Scientific output
  • migration
    • Migration to Hábrók
    • FAQ
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This is an old revision of the document!

  • Introduction
    • Training
  • Connecting to the system
  • Command line interface
  • Software environment
    • Python
  • Data management
    • clients
  • Job Management
  • Advanced Job Management
  • Examples
  • Additional information
    • Course material
  • migration
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