| Next revision | Previous revision |
| habrok:additional_information:course_material [2021/12/09 15:02] – external edit 127.0.0.1 | habrok:additional_information:course_material [2024/11/26 09:30] (current) – pedro |
|---|
| ====== Course material ====== | ====== Course material ====== |
| |
| * **Basic Peregrine course** | * **Large scale computations and data analysis on the Hábrók cluster (Basic)** |
| * [[https://www.rug.nl/society-business/centre-for-information-technology/education/it-courses/voor-cit-academy/basic-peregrine|Details]] | * [[habrok:introduction:courses|Details]] |
| * {{ :peregrine:additional_information:peregrine_course.pdf |Slides}} | * {{ :habrok:additional_information:basic_habrok_course.pdf |Slides}} |
| * [[.course_material:exercises_solutions|Exercises]] | * [[.course_material:exercises_solutions|Exercises]] |
| * [[https://drive.google.com/a/rug.nl/file/d/1lUNjgpy8e6ihAXq1hiEniRTE--7Cx0K5/view?usp=sharing|Exercise files]] | * [[https://drive.google.com/file/d/1_r2IcejftSQKc427pq_v_vawiexCVtS6/view?usp=sharing|Exercise files]] |
| | |
| * **Advanced Peregrine course** | |
| * [[https://www.rug.nl/society-business/centre-for-information-technology/education/it-courses/voor-cit-academy/advanced-peregrine|Details]] | |
| * {{ :peregrine:additional_information:peregrine_advanced_course.pdf |Slides}} | |
| * [[.course_material:advanced_exercises_solutions| Exercises]] | |
| * [[https://github.com/rug-cit-hpc/cluster_course|Exercise files]] | |
| | |
| * **Singularity (old/outdated)** | |
| * {{ :peregrine:additional_information:ris_academy_-_singularity.pdf |Seminar slides}} | |
| * {{ :peregrine:additional_information:singularity.txt |Seminar demo commands}} | |
| * {{ :peregrine:additional_information:ris_academy_-_singularity_tutorial.pdf |Tutorial}} | |
| * [[.course_material:singularity_walkthrough]] | |
| | |
| * **Practical Bioinformatics for Biologists - Peregrine (2019)** | |
| * {{ :peregrine:additional_information:practical_bioinformatics_for_biologists_-_peregrine_course_-_january_2019.pdf |Slides}} | |
| * {{ :peregrine:additional_information:practical_bioinformatics_for_biologists_-_peregrine_course_exercises_-_january_2018.pdf |Exercises}} | |
| | |
| * **Programming C for Biologists - Peregrine tutorial (2021)** | |
| * Basic and Advanced Peregrine course slides: see sections above | |
| * {{ :peregrine:additional_information:using_your_own_code_on_peregrine.pdf |Using your own source code on Peregrine}} | |
| * Exercises: | |
| - Do the Basic Peregrine course exercises | |
| - {{ :peregrine:additional_information:using_your_own_code_on_peregrine_-_exercises.pdf |Compiling and using your own C application}} | |
| - Do part II of the Advanced Peregrine course exercises | |
| |
| | * **Large scale computations and data analysis on the Hábrók cluster (Advanced)** |
| | * [[habrok:introduction:courses#advanced_habrok_course|Details]] |
| | * {{ :habrok:additional_information:habrok_advanced_course.pdf |Slides}} |
| | * [[habrok:additional_information:course_material:advanced_exercises_solutions|Exercises]] |
| | * [[https://gitrepo.service.rug.nl/cit-hpc/habrok/cluster_course|Exercise files]] |