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habrok:additional_information:course_material [2021/12/09 15:02] – external edit 127.0.0.1habrok:additional_information:course_material [2026/04/10 12:22] (current) – pedro
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 ====== Course material ====== ====== Course material ======
  
-  * **Basic Peregrine course** +  * **Large scale computations and data analysis on the Hábrók cluster (Basic)** 
-    * [[https://www.rug.nl/society-business/centre-for-information-technology/education/it-courses/voor-cit-academy/basic-peregrine|Details]] +    * [[habrok:introduction:courses|Details]] 
-    * {{ :peregrine:additional_information:peregrine_course.pdf |Slides}}+    * {{ :habrok:additional_information:basic_habrok_course.pdf |Slides}}
     * [[.course_material:exercises_solutions|Exercises]]     * [[.course_material:exercises_solutions|Exercises]]
-    * [[https://drive.google.com/a/rug.nl/file/d/1lUNjgpy8e6ihAXq1hiEniRTE--7Cx0K5/view?usp=sharing|Exercise files]]+    * [[https://drive.google.com/file/d/1_r2IcejftSQKc427pq_v_vawiexCVtS6/view?usp=sharing|Exercise files]]
  
-  * **Advanced Peregrine course** +  * **Research Support Hub - Working with Python on Hábrók** - <color #ed1c24>**NEW!**</color> 
-    * [[https://www.rug.nl/society-business/centre-for-information-technology/education/it-courses/voor-cit-academy/advanced-peregrine|Details]] +    * [[habrok:introduction:courses#research_support_hub|Details]] 
-    * {{ :peregrine:additional_information:peregrine_advanced_course.pdf |Slides}} +    * [[..:introduction:courses:rsh_python_habrok|Slides and exercises]]
-    * [[.course_material:advanced_exercises_solutions| Exercises]] +
-    * [[https://github.com/rug-cit-hpc/cluster_course|Exercise files]] +
- +
-  * **Singularity (old/outdated)** +
-    * {{ :peregrine:additional_information:ris_academy_-_singularity.pdf |Seminar slides}} +
-    * {{ :peregrine:additional_information:singularity.txt |Seminar demo commands}} +
-    * {{ :peregrine:additional_information:ris_academy_-_singularity_tutorial.pdf |Tutorial}} +
-    * [[.course_material:singularity_walkthrough]] +
- +
-  * **Practical Bioinformatics for Biologists - Peregrine (2019)** +
-    * {{ :peregrine:additional_information:practical_bioinformatics_for_biologists_-_peregrine_course_-_january_2019.pdf |Slides}} +
-    * {{ :peregrine:additional_information:practical_bioinformatics_for_biologists_-_peregrine_course_exercises_-_january_2018.pdf |Exercises}} +
- +
-  * **Programming C for Biologists - Peregrine tutorial (2021)** +
-    * Basic and Advanced Peregrine course slides: see sections above +
-    * {{ :peregrine:additional_information:using_your_own_code_on_peregrine.pdf |Using your own source code on Peregrine}} +
-    * Exercises: +
-      - Do the Basic Peregrine course exercises +
-      - {{ :peregrine:additional_information:using_your_own_code_on_peregrine_-_exercises.pdf |Compiling and using your own C application}} +
-      - Do part II of the Advanced Peregrine course exercises+
  
 +  * **Large scale computations and data analysis on the Hábrók cluster (Advanced)** - **<color #ed1c24>Discontinued</color>**
 +    * {{ :habrok:additional_information:habrok_advanced_course.pdf |Slides}}
 +    * [[habrok:additional_information:course_material:advanced_exercises_solutions|Exercises]]
 +    * [[https://gitrepo.service.rug.nl/cit-hpc/habrok/cluster_course|Exercise files]]