University of Groningen https://wiki.hpc.rug.nl/ 2026-08-19T16:05:11+00:00 https://wiki.hpc.rug.nl/ https://wiki.hpc.rug.nl/_media/wiki/logo.png text/html 2026-08-19T07:37:50+00:00 hans (hans@undisclosed.example.com) https://wiki.hpc.rug.nl/vre/currentfunctionality?rev=1787125070&do=diff [hskb>] afbeelding vervangen door afbeelding onder security & privacy opdelen in 1. functionaliteit (DICOM etc) en 2. beschikbare applicaties? [<hskb] Current Functionality A Virtual Research Environment (VRE) is a shared data space for one or more researchers with access to the VRE. These researchers have a Virtual Desktop Infrastructure (VDI) connected to that VRE. text/html 2026-08-18T14:28:53+00:00 marguerite (marguerite@undisclosed.example.com) https://wiki.hpc.rug.nl/vre/solution?rev=1787063333&do=diff VRE as a solution At its core, a VRE is a secure virtualized research environment consisting of a virtual desktop infrastructure (VDI) and, where necessary, additional desired functionality. Additional functionality is added based on specific research requirements to suit researcher’s needs. text/html 2026-08-17T08:32:25+00:00 burcu (burcu@undisclosed.example.com) https://wiki.hpc.rug.nl/rdms/webapp/databrowser?rev=1786955545&do=diff Data Browser General The "Data Browser" is the main area of the RDMS Web interface for navigating and managing your files and folders. It is displayed when you log in to the Web interface. You can access it at any time by selecting the button in the navigation menu on the left. text/html 2026-08-17T08:32:08+00:00 burcu (burcu@undisclosed.example.com) https://wiki.hpc.rug.nl/?image=rdms%3Awebapp%3Arestore_bin9.png&ns=rdms%3Awebapp&rev=1786955528&tab_details=history&media_do=diff&do=media <img src="https://wiki.hpc.rug.nl/_media/rdms/webapp/restore_bin9.png?w=500&amp;h=500&amp;tok=1f58a6" alt="restore_bin9.png" loading="lazy" width="500" height="500" /> text/html 2026-08-17T08:29:28+00:00 burcu (burcu@undisclosed.example.com) https://wiki.hpc.rug.nl/?image=rdms%3Awebapp%3Arestore_bin8.png&ns=rdms%3Awebapp&rev=1786955368&tab_details=history&media_do=diff&do=media <img src="https://wiki.hpc.rug.nl/_media/rdms/webapp/restore_bin8.png?w=500&amp;h=500&amp;tok=aa6c12" alt="restore_bin8.png" loading="lazy" width="500" height="500" /> text/html 2026-08-17T08:05:02+00:00 burcu (burcu@undisclosed.example.com) https://wiki.hpc.rug.nl/?image=rdms%3Awebapp%3Arestore_bin6.png&ns=rdms%3Awebapp&rev=1786953902&tab_details=history&media_do=diff&do=media <img src="https://wiki.hpc.rug.nl/_media/rdms/webapp/restore_bin6.png?w=500&amp;h=500&amp;tok=f8ec61" alt="restore_bin6.png" loading="lazy" width="500" height="500" /> text/html 2026-08-17T08:04:35+00:00 burcu (burcu@undisclosed.example.com) https://wiki.hpc.rug.nl/?image=rdms%3Awebapp%3Arestore_bin7.png&ns=rdms%3Awebapp&rev=1786953875&tab_details=history&media_do=diff&do=media <img src="https://wiki.hpc.rug.nl/_media/rdms/webapp/restore_bin7.png?w=500&amp;h=500&amp;tok=338d6b" alt="restore_bin7.png" loading="lazy" width="500" height="500" /> text/html 2026-08-17T08:04:35+00:00 burcu (burcu@undisclosed.example.com) https://wiki.hpc.rug.nl/?image=rdms%3Awebapp%3Arestore_bin5.png&ns=rdms%3Awebapp&rev=1786953875&tab_details=history&media_do=diff&do=media <img src="https://wiki.hpc.rug.nl/_media/rdms/webapp/restore_bin5.png?w=500&amp;h=500&amp;tok=a3db11" alt="restore_bin5.png" loading="lazy" width="500" height="500" /> text/html 2026-08-17T06:50:13+00:00 burcu (burcu@undisclosed.example.com) https://wiki.hpc.rug.nl/?image=rdms%3Awebapp%3Arestore_bin4.png&ns=rdms%3Awebapp&rev=1786949413&tab_details=history&media_do=diff&do=media <img src="https://wiki.hpc.rug.nl/_media/rdms/webapp/restore_bin4.png?w=500&amp;h=500&amp;tok=ca6b31" alt="restore_bin4.png" loading="lazy" width="500" height="500" /> text/html 2026-08-17T06:48:50+00:00 burcu (burcu@undisclosed.example.com) https://wiki.hpc.rug.nl/?image=rdms%3Awebapp%3Arestore_bin3.png&ns=rdms%3Awebapp&rev=1786949330&tab_details=history&media_do=diff&do=media <img src="https://wiki.hpc.rug.nl/_media/rdms/webapp/restore_bin3.png?w=500&amp;h=500&amp;tok=50a4ff" alt="restore_bin3.png" loading="lazy" width="500" height="500" /> text/html 2026-08-17T06:47:23+00:00 burcu (burcu@undisclosed.example.com) https://wiki.hpc.rug.nl/?image=rdms%3Awebapp%3Arestore_bin2.png&ns=rdms%3Awebapp&rev=1786949243&tab_details=history&media_do=diff&do=media <img src="https://wiki.hpc.rug.nl/_media/rdms/webapp/restore_bin2.png?w=500&amp;h=500&amp;tok=cd42a0" alt="restore_bin2.png" loading="lazy" width="500" height="500" /> text/html 2026-08-17T06:44:02+00:00 burcu (burcu@undisclosed.example.com) https://wiki.hpc.rug.nl/?image=rdms%3Awebapp%3Arestore_bin1.png&ns=rdms%3Awebapp&rev=1786949042&tab_details=history&media_do=diff&do=media <img src="https://wiki.hpc.rug.nl/_media/rdms/webapp/restore_bin1.png?w=500&amp;h=500&amp;tok=6ce3cf" alt="restore_bin1.png" loading="lazy" width="500" height="500" /> text/html 2026-08-14T12:39:54+00:00 pedro (pedro@undisclosed.example.com) https://wiki.hpc.rug.nl/habrok/job_management/scheduling_system?rev=1786711194&do=diff Resource allocation: Jobs and jobscripts On the cluster users can execute sets of tasks, which are called jobs. These jobs are a combination of a set of requirements and a list of tasks that need to be run. A scheduling system will take these jobs and run them on the available resources. text/html 2026-08-14T09:25:43+00:00 burcu (burcu@undisclosed.example.com) https://wiki.hpc.rug.nl/rdms/access/start?rev=1786699543&do=diff Other Ways to Connect to the RDMS So far, we have described how to access the RDMS through the RDMS web interface. The RDMS can also be accessed, however, through other clients and protocols. In this section of the Wiki and in its subsections, we will describe how to access and transfer data to the RDMS using first- and third-party clients that can be installed on your own machine. The reason to use other ways to connect to the RDMS is rooted in the fact that the web interface can only manage f… text/html 2026-08-14T09:05:54+00:00 burcu (burcu@undisclosed.example.com) https://wiki.hpc.rug.nl/rdms/webapp/search?rev=1786698354&do=diff Search The RDMS Web interface provides extensive and flexible search functionality. Unlike other UG storage solutions, the RDMS search engine allows you to use metadata for precise data queries. You can also create more advanced searches by combining multiple metadata entries. The following sections explain the basic search functions and provide examples of simple and advanced metadata queries. text/html 2026-08-14T08:46:29+00:00 burcu (burcu@undisclosed.example.com) https://wiki.hpc.rug.nl/?image=rdms%3Awebapp%3Ardms_webbrowser.png&ns=rdms%3Awebapp&rev=1786697189&tab_details=history&media_do=diff&do=media <img src="https://wiki.hpc.rug.nl/_media/rdms/webapp/rdms_webbrowser.png?w=500&amp;h=500&amp;tok=67ea2f" alt="rdms_webbrowser.png" loading="lazy" width="500" height="500" /> text/html 2026-08-14T07:16:09+00:00 burcu (burcu@undisclosed.example.com) https://wiki.hpc.rug.nl/rdms/access/mac?rev=1786691769&do=diff With Mac For Mac users, we currently offer the following connection options: * Usage of the RDMS web interface. * Using Finder with WebDAV. * Using Cyberduck with WebDAV. While the usage of the web portal is convenient for permission management, working with metadata, management of RDMS Team Drives and Projects, as well as the related archiving workflows, it is very limited in its up-/download capabilities (max. 50MB per file). text/html 2026-08-14T07:13:44+00:00 burcu (burcu@undisclosed.example.com) https://wiki.hpc.rug.nl/rdms/access/linux?rev=1786691624&do=diff With Linux There are multiple ways to interact with the RDMS from the Linux OS. * Via the RDMS web interface: The RDMS web interface will allow you to upload or download single files that are not bigger than 50 MB, but it is mainly written for the management of groups and projects and to search for data. text/html 2026-08-14T07:10:04+00:00 burcu (burcu@undisclosed.example.com) https://wiki.hpc.rug.nl/rdms/access/windows/winscp?rev=1786691404&do=diff WinSCP !!Attention!! Due to updates to WinSCP, the last working version that uses WebDAV to connect to the RDMS is WinSCP v6.3.7. If you are not able to see the folders inside your Home Drive, you can try to downgrade WinSCP to the last working version. Because of recent security concerns, however, we advise switching to text/html 2026-08-14T07:08:39+00:00 burcu (burcu@undisclosed.example.com) https://wiki.hpc.rug.nl/rdms/access/windows?rev=1786691319&do=diff With Windows The RDMS is based on the iRODS software, which is developed with Linux and line commands in mind. This means that if you use Windows as your operating system, you will need to use a client to connect to the RDMS, handle data and user management, and to initiate file up- and download. Here we present the options you have (and that we support) to connect to the RDMS from a Windows machine.